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Introduction to Digital Bioimage Analysis

24-27 September 2019 | i3S - Porto




Principles, techniques and ethics of digital bioimage processing.

Basic commands of ImageJ/Fiji software.

Working with multidimensional (2D, 3D, time-lapse, position) bioimages.

Enhancement and processing of images. Extract quantitative numerical data.

Design of simple workflows for automation of image analysis with ImageJ macros.

Introduction to Cellprofiler.

Participants are invited to submit in advance an analysis problem/data of their interest that might be addressed in the course as an individual mini-project (with the help of the tutors).


Requirements: The participant should bring a personal laptop for the sessions.



Early bird | Until 31 July 2019

i3S members - 100 € | Payment deadline: 2 August 2019

External participants - 150 € | Payment deadline: 2 August 2019




For more information and registration:








Course on High Throughput Screening and Image Analysis for Biosciences @ i3S

27-31 May 2019 | i3S, Porto 


Fundamentally practical, this course aims introducing the participants in experimental design, image acquisition, image, and data analysis for high throughput (HT) experiments. These are essential skills when generating a massive amount of imaged-based data in the biosciences field. Lectures will be given by specialists in the field and participants will learn how to use state of the art technology for HT experimentation and open-source software for image and data analysis. Attendants will get acquainted with use of automated liquid handling equipment and high content (HC) imagers such as IN Cell Analyzer (HCS microscope) and ImageStream (imaging flow cytometer). Interaction with HTS/HCS specialists will be fostered due to the restricted amount of participants.






Registration until 15th April 2019 | Payment deadline: 22nd April

i3S members – 180€ (lunch not included)

General registration - 250€ (lunch included)

Between 16th April and 20th May 2019 | Payment deadline: 27th May

i3S members or General registration – 350€ (lunch included)

Limited number of participants: 20


Contact: This email address is being protected from spambots. You need JavaScript enabled to view it.

For more information and registration link:

ALM micrsocopy training 


Course on Optical Microscopy Imaging for Bioscience - 11th Edition @ i3S

01-05 April 2019 | i3S, Porto 


The 11th edition of the Optical Microscopy Imaging for Bioscience offers to the participants a comprehensive light microscopy course that explores the fundamentals of light microscopy and introduces the state-of-art of advanced fluorescence microscopy techniques. The course will flow from sample preparation to quantitative image analysis and will include theoretical and hands-on practical sessions. Specialists in microscopy will teach the lectures and the major microscopy companies support the practical sessions.


Target Audience:

The course is designed to master and PhD students, early career researchers plus all other researchers interested in acquire skills in optical microscopy.





Early Bird | Until March 3rd 2019

i3S members - 200€

External Participants - 270€

Payment deadline: March 10th 2019

Late registration | March 4th until March 17rd 2019

i3S members - 250€

External Participants - 325€

Payment deadline: March 24th 2019



For more information and registration: