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The MICC-CNC offers a wide range of different instruments for your research, from epifluorescence microscopy, to high-speed confocal microscopy and laser catapulting microdissection. The systems are prepared for advanced applications, including live cell imaging, and single-cell calcium measurement, enabling researchers to image dynamic events and molecular interactions. The P.A.L.M. laser microdissection microscope is a perfect tool for the isolation of the different cell population within a sample, allowing its full characterization.

 


 

 

LSM 710 – 34Ch (Axio Observer) - Inverted microscope with a motorized stage equipped with:

  • Laser lines: Diode 405nm, AR multiline (458nm, 488nm, 514nm), 561nm and 633nm, plus  a QUASAR detection unit (34 channels);
  • The system is prepared for live cell imaging assays: temperature and COcontrol (small incubator);
  • Objectives: Plan-Apochromat 20x/0,8; Plan-Apochromat 40x/1,4 oil; Plan-Apochromat 63x/1,4 oil;
  • Software: Zen Black 2012 - ZEN Module Measurement /ZEN Module Multi-Channel / ZEN Module Image Analysis / ZEN Module Time Lapse / ZEN Module Z Stack / ZEN Module Extended Focus / ZEN Module Autofocus / ZEN Module Colocalisation / ZEN Module Spectral Unmixing and ZEN Module Physiology.

 

 

LSM 710 – 34Ch -T-PMT (Axio Observer)Inverted microscope with DIC and motorized stage equipped with:

  • Laser lines: Diode 405nm, AR multiline (458nm, 488nm, 514nm), 561nm and 633nm, plus a QUASAR detection unit (34 channels); T-PMT and BIG detector (filter set4-green-red 500-550/570-610);
  • The system is prepared for live cell imaging assays: temperature and O2/COcontrol (XL incubator);
  • Objectives: Plan-Apochromat 20x/0,8; Plan-Apochromat 40x/1,4 oil; LCI Plan-Neofluar 63x/1,3Imm Corr ;Alpha Plan-Apochromat 100x/1,46 oil DIC;
  • Software: Zen Black 2012 - ZEN Module Measurement /ZEN Module Multi-Channel / ZEN Module Image Analysis / ZEN Module Time Lapse / ZEN Module Z Stack / ZEN Module Extended Focus/ ZEN Module Autofocus / ZEN Module Colocalisation / ZEN Module Spectral Unmixing and ZEN Module Physiology.

 

 

Cell Observer SD Spinning-Disk MicroscopeHigh speed fully motorized confocal microscope equipped with:

  • Yokogawa CSU-X1M5000 disk;
  • 3 solid state lasers (405nm-50mW, 488nm-100mW, and 561nm-50mW);
  • EM-CCD high sensitivity camera (Evolve Delta);
  • Direct FRAP module, allowing live imaging and photomanipulation assays;
  • Definite Focus and DIC;
  • Microscope with ASI motorized stage with top plate Z-piezo;
  • The system is equipped with a large incubator and small stage incubator for temperature, COand humidity control;
  • Objectives: Plan-Apochromat 20x/0,8; LCI-Planneofluar 63x/1,3 corr DIC water/glycerol; Alpha Plan-ApoChromat 100x/1,46 oil DIC;
  • Software: Zen System- Blue 2012 with ZEN Module Measurement / ZEN Module Multi-Channel / ZEN Module Image Analysis / ZEN Module Time Lapse / ZEN Module Z Stack / ZEN Module Extended Focus / ZEN Module Autofocus / ZEN Module Colocalisation /ZEN Module Physiology / ZEN module Tiles and Positions.

     

     


     

     

    Axio Observer Z1 Live Cell Imaging StationFully motorized inverted microscope suitable for live cell imaging experiments, equipped with:

    • A large size incubator for temperature control and a small stage incubator for temperature control and COsupply;
    • The system is equipped with two monochromatic cameras: a CCD camera (AxioCam HRm) and a CMOS camera (Hamamatsu Orca Flash4.0);
    • Objectives: EC-PlanNeofluar 10x/0,3; Plan-Apochromat 20x/0,8; Plan-Apochromat 40x/0,95 Korr; EC-PlanNeofluar 40x/1,3 oil; Plan-ApoChromat 63x/1,4 oil;
    • Software: Zen Pro Blue 2012 with ZEN Module Measurement / ZEN Module Multi-Channel ZEN Module Z Stack / ZEN Module Time series / ZEN Module Tiles and Position/ZEN Module Autofocus / ZEN Module Experiment Designer.

 

 

Axio Imager Z2 Up-right with ApoTome2 and Stereo Investigator softwareFully motorized upright microscope equipped with:

  • Apotome2 (for structural illumination);
  • Stereo Investigator software (for stereology studies);
  • Two high-resolution cameras (AxioCam HRm and AxioCam HRc);
  • Motorized DIC for the 63x objective;
  • Objectives: EC-PlanNeofluar 5x/0,16; Plan-ApoChromat 20x/0,8; Plan-ApoChromat 40x/1,3 oil; Plan-ApoChromat 63x/1,4 oil;
  • Software: Zen Pro Blue 2012 with ZEN Module Measurement / ZEN Module Multi-Channel ZEN Module Z Stack / ZEN Module Time series / ZEN Module Tiles and Position/ZEN Module Autofocus / ZEN Module Experiment Designer/ZEN Module Apotome.

 

 

Axiovert 200 Single Cell Calcium Imaging SystemInverted microscope for single cell calcium measurements:

  • Coupled with a Lambda DG-4 and a perfusion system;
  • Highly sensitive camera (CoolSnap HQ) - allowing to follow fast changes in ion concentrations in dual wavelength ratio imaging applications;
  • Objectives: PlanNeofluar 5x/0,15; PlanNeofluar 20x/0,5; Fluar 40x/1,3 oil; Fluar 100x/1,3 oil;
  • Software: Metafluar (Molecular Devices).

 

 

Axioskop 2 plus Widefield microscopeUpright widefield fluorescence microscope equipped with:

  • Phase contrast objectives;
  • A color CCD camera for brightfield/fluorescence imaging (AxioCam HRc);
  • Objectives: PlanNeofluar 1,5x/0,005; PlanNeofluar 5x/0,15; PlanNeofluar 20x/0,5; PlanNeofluar 40x/0,75; PlanNeofluar 63x/1,25 oil; PlanNeofluar 100x/1,3 oil;
  • Software: Axiovision with Multichannel Module.

 

 


 

 

PALM MicrobeamRel 4.2 Laser Microdissection microscope - Inverted Microscope Axio Observer Z1 equipped for:

  • Laser Microdissection using UV laser and catapulting technology and with CapMover II;
  • Objectives: Fluar 5x/0,25; LD PlanNeofluar 40x0,6 corr ; LD PlanNeofluar 63x0,75 corr;

 

 

PALM Robot Microbeam Laser Microdissection microscope - Inverted Microscope Axiovert 200M equipped for:

  • Laser Microdissection using UV laser and catapulting technology;
  • Objectives: Fluar 5x/0,25; LD-PlanNeofluar 20x/0,4; LD-PlanNeofluar 40x/0,6; Plan-ApoChromat 63x/1,4 oil;
  • Software: Axiovision with Multichannel / z-stack, MosaicX, Timelapse / Extended Focus / Automeasure Plus / and Commander modules;
  • PALM Robot Software with Autofocus, LMPC and Multichannel Fluorescence Modules.

 

 

 

The AIF offers you can a wide range of different instruments for your research. From the convencional widefield and confocal microscopes to the super-resolution microscopes, you can select the best equipment for your experiments.
 


 

Leica SP5 Inverted - The Leica SP5 confocal microscope is equipped with:

  • A spectral head that employs a prism, movable slits, mirrors, and computer control to permit the operator to choose which bands of light at specific wavelengths will be focused simultaneously onto each of three photomultiplier detectors.
  • This system also allows emission spectra (with 5-nm resolution) to be collected from a diffraction-limited-size spot.

 

Leica SP5 Live Upright (HyD) - Another SP5, with a few notable differences:

  • Upright configuration;
  • Equipped with very sensitive Hybrid detectors and a resonant scanner, making it ideal for confocal live imaging.

 

Andor Spinning Disk - Spinning disk confocal microscopy:

  • Widefield and laser scanning confocal microscopy;
  • This confocal technique allows acquisition of images at very high frame rates with minimum illumination of samples.
  • These qualities make Spinning Disk confocal microscopy particularly well suited to high-speed 3D imaging of living systems.

 

Andor Spinning Disk W1 - This confocal microscope allows acquisition of images at very high frame rates with minimum illumination of samples in a broader field of view when compared with other spinning disks.

 

 


 

Multi-Photon Microscope - A multi-photon, or two-photon, microscope uses instrumentation similar to that of a laser scanning confocal microscope: A laser source for sample excitation, a scanhead with galvanometer controlled mirrors (or acousto-optic deflectors) to scan the excitation beam, and photomultiplier tubes to detect fluorescent signals. However, the confocal image differs in that optical sectioning is obtained using excitation in multi-photon microscopy whereas in confocal microscopy it is achieved using the emission pinhole. 

 

 


 

Deltavision OMX (SIM) - The Deltavision OMX is a structured illumination super-resolution microscope that allows the visualization of structures or objects below the theoretical limit of resolution. This microscope technique uses the structured illumination approach which is simple to use and gives fast results with minimal to medium processing, allowing users to obtain super-resolution images with ease. The resolution limit of this technique is about half the theoretical limit of conventional microscopes at approximately 100nm.

 

DSTORM (SMLM) - The dSTORM is another super-resolution microscope based on single-molecule localization microscopy technique, more specifically, Stochastic Optical Reconstruction Microscopy. This technique relies on acquiring a big number of frames over time to distinguish different molecules while still pinpointing their location with high accuracy. The temporal distinction is achieved by inducing a "dark" triple state of energy which will not emit fluorescent light, allowing a distinction between different fluorophores in very small spaces, even below the actual resolution limit. This technique is easy to use but the sample preparation can be tricky and it requires big data storage and high processing power and expertise to properly reconstruct reliable and useful data.

 

 


 

Lightsheet Microscope - Light Sheet Microscopy (LSM) is a fluorescence microscopy technique, where the illumination is done perpendicularly to the detection. The technique shapes the illumination laser beam into a rectangle and then focuses it down only in one direction, using a cylindrical lens (SPIM) or galvanometric mirrors (DSLM). This forms a thin "sheet of light" right in the focal plane of the detection objective, illuminating the whole sample plane at the same time. A CMOS camera records the fluorescent signal. This allows obtaining images of a big area in a fast way with good sectioning of the sample and out-of-focus light suppression. LSM is especially well suited for the investigation of the development of large samples to study features (such as gene expression patterns) that require high resolution while being extended over a large volume and a long period of time. It has been successfully used to track developmental processes on Zebrafish, Drosophila fly, C. elegans nematodes or Arabidopsis plants among others.

 

 


 

DeltaVision - The DeltaVision is a fully automated research microscope that offers:

  • High sensitivity to fluorescence and interference contrast (DIC);
  • Equipped with an EM-CCD camera;
  • Fully motorized stage (XYZ);
  • Different filters;
  • A controlled atmosphere box, coupled with excellent optics it provides excellent conditions for live imaging of cells;
  • The DeltaVision system is also very tightly controlled to provide post-acquisition optical sectioning through deconvolution algorithms;
  • It is also very good for quantitative image-processing.

 

Leica DMRA2 - The Leica DMRA2 is a fully automated research microscope that offers high sensitivity to fluorescence and interference contrast (DIC). The powerful image-processing Leica DMRA2 software operates the microscope with precision.

 

Leica DMLB2 - The Leica DMLB2 is an upright microscope for experiments with Brightfield and DIC.

 

Nikon HCScreening - The Nikon HCS is an inverted widefield microscope with complete automation possibility. This microscope allows users to acquire large amounts of data with ease by giving instructions to the software at the beginning and it will do the rest. It is equipped with:

  • A sCMOS Andor Zyla camera with a large field of view and a chip size of 2048x2048;
  • With both high and low magnification objectives for a quick screen with low magnification and then a higher resolution image after object identification.

 

Leica and Zeiss HCScreening - The Leica and Zeiss HCS are inverted widefield microscopes with an automated stage and fast sets of filter wheels that allow automatic image acquisition (screening) and large field tile/grid stitching through a fast acquisition protocol. These microscopes are prepared for automatically acquiring images at a lower magnification, where it will identify an object or structure of interest, and then acquire them at a higher and better resolution magnification.

 

 


 

Zeiss Stereo Lumar - Zeiss' Stereo Lumar is a fluorescence capable and fully automated stereoscope with an increased focusing range, letting you take pictures of tissues of whole adult fish, mice, and even larger animals. With it's high resolution, high-quality ApoLumar 1.2 lens, variable zoom, and large working distance, users have the flexibility to choose between their desired zoom without sacrificing quality.

 

Hamamatsu Aequoria - The Aequoria MDS system is a macroscopic system to acquire luminescence in large samples like living large organisms, bacterial plates, plants or well plates, making it suitable for high-throughput screens. With an EMCCD chip, it can detect the smallest signals on your samples with ease.

 

OPenT - The OPenT microscope is an Optical Projection Tomography system which allows seeing big samples such as whole organs or embryos without having to open them or taking the organ out. Samples need to be clear and transparent. This system works basically as a CT scan but uses light instead of x-rays for the image acquisition. For more details, advantages, and limitations, please speak with the Advanced Imaging personnel.

 

 

The Bioimaging Facility offers you a wide range of different instruments for your research.
 


 

3i Marianas SDC – spinning disk confocal microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=3i_marianas_sdc).

 

Zeiss Cell Observer SD – spinning disk confocal microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_cell_observer_sd).

 

Zeiss LSM 880 with Airyscan – confocal laser point-scanning microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_lsm_880).

 

Zeiss LSM 710 – confocal laser point-scanning microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_lsm_710).

 

 


 

Leica SP8 MP – multiphoton microscope (with Insight DS+ laser for multiphoton and 488 nm Ar laser for confocal imaging, upright for intravital imaging)

 

 


 

Zeiss Lightsheet Z1 lightsheet fluorescence microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_lightsheet_z1).

 

 


 

Zeiss Cell Observer – motorized widefield fluorescence microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_cell_observer).

 

Zeiss Axiovert 200M – motorized widefield fluorescence microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_axiovert_200m).

 

Leica DM5000B – widefield fluorescence microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=leica_dm5000b).

 

 


 

Zeiss AxioZoom V16 – fluorescence stereomicroscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_axiozoom_v16).

 

Zeiss Lumar V12 – fluorescence stereomicroscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=zeiss_lumar_v12).

 

Leica DM2500 – brightfield microscope (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=leica_dm2500).

 

IVIS Lumina – fluorescence/bioluminescence imaging system (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=ivis_lumina).

 

 


 

Big Guy – Image processing and analysis workstation (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=big_guy).



Colossus – Image processing and analysis workstation (https://imm.medicina.ulisboa.pt/facility/bioimaging/doku.php?id=colossus).

 

 


 

 Leica SP5 Inverted - The Leica SP5 confocal microscope is equipped with:

  • A spectral detection and six laser lines available for excitation (458, 465, 488, 496, 514, and 633 nm);
  • A Ti: Sapphire pulsed laser (710-990 nm, 100 fs, 80 MHz);
  • TCSPC module coupled to a DCC-100 PMT for FLIM;
  • Autocorrelator and two avalanche photodiode detectors (APDs) set for single molecule FCS. 

 

 

The FCULMF offers you a wide range of different instruments for your research.
 


 

Leica SP8 Confocal - Fully motorized confocal equipped with:

  • FLIM
  • Fast z-galvo stage;
  • 405, 488, 532, 633, pulsed WL laser lines;
  • 2x HyD + 1x PMT;
  • SP8 FALCON FLIM capability;
  • FITC, TRITC cubes;
  • Mercury metal halide bulb;
  • Hammamatsu Flash4 camera;
  • Incubation chamber for live imaging;
  • LAS X w/ Matrixscreener module.

 

 


 

Leica DMI6000b screening widefield - Fully motorized widefield microscope equipped with:
  •  A, CFP, YFP, N2.1, CY5 cubes;
  • DIC @ 5x, 20x, 63x;
  • Hammamatsu Flash4 camera;
  • Incubation chamber for live imaging w/ custom liquid dispenser;
  • LAS X w/ Matrixscreener module.

 

Olympus BX51 widefield color - Manual widefield microscope equipped with:

  • U-MWU2, U-MNIB, U-MNG, U-MSWB filter cubes;
  • Olympus U-RFL-T Mercury lamp;
  • DIC @ 10x, 40x;
  • Axiocam mRm (B&W) and TIS DFK32U274 (color) cameras.

 

Olympus BX60 widefield B&W - Manual widefield microscope equipped with:

  • U-MWU2, U-MNIB, U-MNG, U-MSWB filter cubes;
  • Olympus U-RFL-T Mercury lamp;
  • Hamamatsu ORCA-R2 camera.

 

Olympus IX50 widefield B&W - Manual widefield microscope equipped with:
  • U-MWU2, U-MNIB, U-MNG filter cubes;
  • Motorized LUDL FFW (ex+em);
  • DIC @ 20x, 40x;
  • Olympus U-RFL-T Mercury lamp;
  • PCO Sensicam QE camera.

 

Zeiss Axiovert200 - Manual widefield microscope equipped with:
  • Ph1/2+Plas DIC @ 10x, 40x;
  • Zeiss 49, 10, 31, 50 filter cubes;
  • HBO Mercury lamp;
  • Axiocam mRm.

 

 


 

JEOL SEM -

  • Secondary Electron Image (SEI);
  • Backscattered Electron Image (BEI);
  • Resolution: 5,5 nm (SEI: 25 kV, Working Distance (WD) = 10 mm);
  • Magnification: 15X (WD = 28mm) to 200000X (25 steps);
  • Acceleration Voltage: 1, 2, 5, 10, 15, 20, 25 kV;
  • Digital Image Acquisition.

 

Zeiss Lumar V.12 stereoscope color - Fully motorized stereoscope equipped with:

  • Lumar 01, 38 HE, 15 filters;
  • HBO Mercury lamp;
  • Zeiss Axiocam 503 (color).

 

Leica Cryostat - Semi-automated precision microtome for frozen sections.

 

Liquidator 96 pipette - Manual 96 channel pipette from Mettler Toledo, compatible w/ 96 and 384 well plates.

 

Tecan Hydrospeed plate washer - Automated plate washer for cells, beads and ELISAs in 96- and 384-well format.

 

 


 

Voxel2 analysis workstation; Voxel3 analysis workstation; Voxel4 analysis workstation - Intel Core i7-4790 CPU @ 3.60GHz; 16 GB RAM; 256 GB SSD + 1TB HDD; AMD Radeon HD 5450 1GB RAM; 22'' @ 1920 x 1080 x 60 hertz.

 

Voxel5 3D analysis workstation - Intel Core i7-7700 CPU @ 4.20GHz; 32 GB RAM; 120 GB SSD + 240 GB SSD + 2TB HDD; NVidia GTX 1060 6GB RAM; 24'' @ 1920 x 1080 x 60 hertz + 19'' @ 1280 x 1024 x 60 hertz; Bitplane Imaris 9.2.x.

 

Voxel6 3D analysis workstation - Intel Core i5-2500 CPU @ 3.30GHz; 16 GB RAM; 120 GB SSD + 1TB HDD; NVidia GTX 1050Ti 4GB RAM; 24'' @ 1920 x 1080 x 60 hertz; Visage Imaging Amira 5.3.3.